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Cas9 variants
Custom PAM
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Design specific sgRNA (On-target & Off-target)
CRISPR/Cas System (Cas9, Cas12, Cas13, Cas14, etc.)
Step 1
: Enter the query target sequences in FASTA format
(example)
Or upload your input file:
No file selected
Step 2
: Enter the genome sequences in FASTA format
(example)
Step 2
: upload the custom reference genome:
No file selected
Upload the reference genome in FASTA format (Note: the maximum allowed size for the uploaded genome is 8M)
Step 3
: Describe the PAM and sgRNA requirements
Custom PAM
Orientation
3
5
Length of sgRNA
Step 4
: Choose an off-target setting
Yes
No
No. of mismatches:
0M
1M
2M
3M
4M
5M
Step 5
: Click the button below to scan for sgRNA
delay
Scan
Job ID:
Retrieve